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Professor Jae-Hyung Lee appointed as AIChE fellow
Professor Jae-Hyung Lee from the Department of Chemical and Bimolecular Engineering at KAIST was appointed as a fellow in the American Institute of Chemical Engineers (AIChE).
Established in 1908, AIChE is the largest association of chemical engineers worldwide, which now boasts more than 40,000 members from 90 countries.
Following Distinguished Professor Sang Yup Lee from the same department at KAIST, Professor Jae-Hyung Lee is the second Korean appointed as a fellow by the organization.
He has been acknowledged for his innovative research on the improvement of model predictive control of industrial processes.
Professor Lee is the director of the Saudi Armaco-KAIST CO2 Management Center at KAIST, a fellow of the Institute of Electrical and Electronics Engineers (IEEE) and the International Federation of Automatic Control (IFAC), and a member of the Korean Academy of Science and Technology.
He received the Young Investigator Award from the National Science Foundation (NSF) in 1994 and the Computing in Chemical Engineering Award from AIChE in 2013.
2013.11.05 View 10038 -
Metabolically engineered E. coli producing phenol
Many chemicals we use in everyday life are derived from fossil resources. Due to the increasing concerns on the use of fossil resources, there has been much interest in producing chemicals from renewable resources through biotechnology.
Phenol is an important commodity chemical, and is a starting material for the production of numerous industrial chemicals and polymers, including bisphenol A and phenolic resins, and others. At present, the production of phenol entirely depends on the chemical synthesis from benzene, and its annual production exceeds 8 million tons worldwide. Microbial production of phenol seems to be a non-viable process considering the high toxicity of phenol to the cell.
In the paper published online in Biotechnology Journal, a Korean research team led by Distinguished Professor Sang Yup Lee at the Department of Chemical and Biomolecular Engineering from the Korea Advanced Institute of Science and Technology (KAIST) reported the successful development of an engineered Escherichia coli (E. coli) strain which can produce phenol from glucose. E. coli has been a workhorse for biological production of various value-added compounds such as succinic acid and 1,4-butanediol in industrial scale. However, due to its low tolerance to phenol, E. coli was not considered a viable host strain for the biological production of phenol.
Professor Lee"s team, a leading research group in metabolic engineering, noted the genetic and physiological differences of various E. coli strains and investigated 18 different E. coli strains with respect to phenol tolerance and engineered all of the 18 strains simultaneously. If the traditional genetic engineering methods were used, this work would have taken years to do. To overcome this challenge, the research team used synthetic small RNA (sRNA) technology they recently developed (Nature Biotechnology, vol 31, pp 170-174, 2013). The sRNA technology allowed the team to screen 18 E. coli strains with respect to the phenol tolerance, and the activities of the metabolic pathway and enzyme involved in the production of phenol. The research team also metabolically engineered the E. coli strains to increase carbon flux toward phenol and finally generated an engineered E. coli strain which can produce phenol from glucose.
Furthermore, the team developed a biphasic extractive fermentation process to minimize the toxicity of phenol to E. coli cells. Glycerol tributyrate was found to have low toxicity to E. coli and allowed efficient extraction of phenol from the culture broth. Through the biphasic fed-batch fermentation using glycerol tributyrate as an in situ extractant, the final engineered E. coli strain produced phenol to the highest titer and productivity reported (3.8 g/L and 0.18 g/L/h, respectively). The strategy used for the strain development and the fermentation process will serve as a framework for metabolic engineering of microorganisms for the production of toxic chemicals from renewable resources.
This work was supported by the Intelligent Synthetic Biology Center through the Global Frontier Project (2011-0031963) of the Ministry of Science, ICT & Future Planning through the National Research Foundation of Korea.
Process of Phenol Production
2013.11.05 View 10596 -
KAIST announced a novel technology to produce gasoline by a metabolically engineered microorganism
A major scientific breakthrough in the development of renewable energy sources and other important chemicals; The research team succeeded in producing 580 mg of gasoline per liter of cultured broth by converting in vivo generated fatty acids
For many decades, we have been relying on fossil resources to produce liquid fuels such as gasoline, diesel, and many industrial and consumer chemicals for daily use. However, increasing strains on natural resources as well as environmental issues including global warming have triggered a strong interest in developing sustainable ways to obtain fuels and chemicals.
Gasoline, the petroleum-derived product that is most widely used as a fuel for transportation, is a mixture of hydrocarbons, additives, and blending agents. The hydrocarbons, called alkanes, consist only of carbon and hydrogen atoms. Gasoline has a combination of straight-chain and branched-chain alkanes (hydrocarbons) consisted of 4-12 carbon atoms linked by direct carbon-carbon bonds.
Previously, through metabolic engineering of Escherichia coli (E. coli), there have been a few research results on the production of long-chain alkanes, which consist of 13-17 carbon atoms, suitable for replacing diesel. However, there has been no report on the microbial production of short-chain alkanes, a possible substitute for gasoline.
In the paper (entitled "Microbial Production of Short-chain Alkanes") published online in Nature on September 29, a Korean research team led by Distinguished Professor Sang Yup Lee of the Department of Chemical and Biomolecular Engineering at the Korea Advanced Institute of Science and Technology (KAIST) reported, for the first time, the development of a novel strategy for microbial gasoline production through metabolic engineering of E. coli.
The research team engineered the fatty acid metabolism to provide the fatty acid derivatives that are shorter than normal intracellular fatty acid metabolites, and introduced a novel synthetic pathway for the biosynthesis of short-chain alkanes. This allowed the development of platform E. coli strain capable of producing gasoline for the first time. Furthermore, this platform strain, if desired, can be modified to produce other products such as short-chain fatty esters and short-chain fatty alcohols.
In this paper, the Korean researchers described detailed strategies for 1) screening of enzymes associated with the production of fatty acids, 2) engineering of enzymes and fatty acid biosynthetic pathways to concentrate carbon flux towards the short-chain fatty acid production, and 3) converting short-chain fatty acids to their corresponding alkanes (gasoline) by introducing a novel synthetic pathway and optimization of culture conditions. Furthermore, the research team showed the possibility of producing fatty esters and alcohols by introducing responsible enzymes into the same platform strain.
Professor Sang Yup Lee said, "It is only the beginning of the work towards sustainable production of gasoline. The titer is rather low due to the low metabolic flux towards the formation of short-chain fatty acids and their derivatives. We are currently working on increasing the titer, yield and productivity of bio-gasoline. Nonetheless, we are pleased to report, for the first time, the production of gasoline through the metabolic engineering of E. coli, which we hope will serve as a basis for the metabolic engineering of microorganisms to produce fuels and chemicals from renewable resources."
This research was supported by the Advanced Biomass Research and Development Center of Korea (ABC-2010-0029799) through the Global Frontier Research Program of the Ministry of Science, ICT and Future Planning (MSIP) through the National Research Foundation (NRF), Republic of Korea. Systems metabolic engineering work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012-C1AAA001-2012M1A2A2026556) by MSIP through NRF.
Short-Chain Alkanes Generated from Renewable Biomass
This diagram shows the metabolic engineering of Escherichia coli for the production of short-chain alkanes (gasoline) from renewable biomass.
Nature Cover Page (September 29th, 2013)
2013.11.04 View 12539 -
A beginner's book for engineering co-published by KAIST professors
A group of KAIST professors published a book (Korean) to draw public attention to engineering.
The book, titled ‘What is Engineering?’, was co-published by 19 KAIST engineering professors for future engineering students and readers interested in exploring what engineering is about.
The co-authors wish to show talented students how important, fun, and helpful engineering is in improving our everyday life even though it is still not a very popular major in Korea.The book contains general knowledge in a wide array of engieering fields such as mechanics, civil, electrical & electronics, materials, chemistry, aerospace, marine systems, nuclear, industrial design, knowledge service, and bio and brain.One of the co-authors who planned for the publication of this book, Pung-Hyun Sung, a professor of nuclear and quantum engineering, said, “Various information, including the history, roles and future prospects of engineering, is contained in this book. It will be a precious guide for future engineers and members of the general public who are interested in understanding why engineering is so important.”
2013.11.04 View 5900 -
Collaboration with Korea Institute of Energy Research
KAIST and the Korea Institute of Energy Research (KIER) agreed on September 4th to further collaboration on energy research such as the development of nano-based hybrid solar cells, bio-fuels, artificial photosynthesis, and carbon dioxide reduction.
The two institutions will select 11 research projects to focus on their cooperation. President Steve Kang (in the right) stood with Jooho Whang, the president of KIER (in the left), holding the signed memorandum of understanding.
2013.11.04 View 8321 -
KAIST's classes now available to take from all around the world
Signed a partnership agreement with Coursera to provide millions of people with online courses in science and technology.
The Korea Advanced Institute of Science and Technology (KAIST), a world-leading research university focusing on science, engineering and technology, joined a new, online platform for open access that serves the needs of Korean and global learners.
KAIST and Coursera, the world"s largest provider of massive open online courses (MOOCs), agreed on October 14th, 2013 to partner for the provision of internet-based open learning, through which the university expects to reinforce its current education initiative, Education 3.0.Steve Kang, president of KAIST, was upbeat about the partnership."We know the benefits and importance of online education that will significantly impact the landscape of today"s higher education. Hopefully, our partnership with Coursera will expand our initiative to continuously provide quality education globally."
With its network of 107 prestigious partner universities and public institutions worldwide, Coursera offers 482 free online courses across a wide field of humanities, science, engineering, and business to 5 million students around the globe.
KAIST will be able to utilize top-notch online courses and lecture contents available on the company"s website. The university can also supply its online courses to the global community, allowing the faculty"s top quality lectures to reach hundreds and thousands of students and adult learners throughout the world.Incorporating advanced information and communications technology, KAIST has implemented a new, smart education program, Education 3.0, since 2012 to effectively meet the growing demands of creating a better and more interactive learning and teaching environment for students and faculty. Under Education 3.0, students study online and meet in groups with a professor for discussions and problem solving.
Tae-Eog Lee, Director of the Center for Excellence in Learning & Teaching at KAIST, said:"We received a phenomenal response from students and professors to the courses made available under Education 3.0. For this year alone, we are offering 60 courses, such classes as calculus, general biology, basic programming, design and communication, bioengineering fundamentals, and logic and artificial intelligence."
Professor Lee added:"It has turned out that our education initiative is not only useful to our students but also quite popular among learners outside the university and Korea. It"s a great thing that KAIST can contribute to the world"s concerted efforts to provide equal opportunities for learning. At the same time, we look forward to seeing the benefits of MOOC-based content being used in our classrooms."
Founded in 2012 by two eminent Stanford University professors, Coursera has held a strong lead in MOOCs. Unlike the traditional online education model, open courseware (OCW), designed for simply sharing lecture materials including videos, slides, and data through the internet, MOOCs develop and evaluate courses, lecture contents, and delivery quality to meet high academic standards—In order to earn credits, subscribers (universities and students) are required to submit course registration, specification, and description; student attendance roster; homework and assignments; and assessment.
Daphne Koller, co-founder of Coursera, commented on the partnership agreement with KAIST:"We are honored to have so many brilliant minds working together to expand educational opportunities globally. To be able to offer courses from professors at the forefront of their fields to millions of people is truly remarkable, and our students remind us daily of the value of spreading this knowledge globally."
Among the partner universities and institutions are Stanford University, California Institute of Technology, Columbia University, École Polytechnique Fédérale de Lausanne, Technion-Israel Institute of Technology, the National University of Singapore, the University of Tokyo, the World Bank, and Shanghai Jiao Tong University.
President Steve Kang (in the left) singed a partnership agreement with Dr. Daphne Koller (in the right), president and CEO of Coursera.
2013.11.04 View 10185 -
A powerful strategy for developing microbial cell factories by employing synthetic small RNAs
The current systems for the production of chemicals, fuels and materials heavily rely on the use of fossil resources. Due to the increasing concerns on climate change and other environmental problems, however, there has been much interest in developing biorefineries for the production of such chemicals, fuels and materials from renewable resources. For the biorefineries to be competitive with the traditional fossil resource-based refineries, development of high performance microorganisms is the most important as it will affect the overall economics of the process most significantly. Metabolic engineering, which can be defined as purposeful modification of cellular metabolic and regulatory networks with an aim to improve the production of a desired product, has been successfully employed to improve the performance of the cell. However, it is not trivial to engineer the cellular metabolism and regulatory circuits in the cell due to their high complexity.
In metabolic engineering, it is important to find the genes that need to be amplified and attenuated in order to increase the product formation rate while minimizing the production of undesirable byproducts. Gene knock-out experiments are often performed to delete those metabolic fluxes that will consequently result in the increase of the desired product formation. However, gene knock-out experiments require much effort and time to perform, and are difficult to do for a large number of genes. Furthermore, the gene knock-out experiments performed in one strain cannot be transferred to another organism and thus the whole experimental process has to be repeated. This is a big problem in developing a high performance microbial cell factory because it is required to find the best platform strain among many different strains. Therefore, researchers have been eager to develop a strategy that allows rapid identification of multiple genes to be attenuated in multiple strains at the same time.
A Korean research team led by Distinguished Professor Sang Yup Lee at the Department of Chemical and Biomolecular Engineering from the Korea Advanced Institute of Science and Technology (KAIST) reported the development of a strategy for efficiently developing microbial cell factories by employing synthetic small RNAs (sRNAs). They first reported the development of such system in Nature Biotechnology last February. This strategy of employing synthetic sRNAs in metabolic engineering has been receiving great interest worldwide as it allows easy, rapid, high-throughput, tunable, and un-doable knock-down of multiple genes in multiple strains at the same time. The research team published a paper online on August 8 as a cover page (September issue) in Nature Protocols, describing the detailed strategy and protocol to employ synthetic sRNAs for metabolic engineering.
In this paper, researchers described the detailed step-by-step protocol for synthetic sRNA-based gene expression control, including the sRNA design principles. Tailor-made synthetic sRNAs can be easily manipulated by using conventional gene cloning method. The use of synthetic sRNAs for gene expression regulation provides several advantages such as portability, conditionality, and tunability in high-throughput experiments. Plasmid-based synthetic sRNA expression system does not leave any scar on the chromosome, and can be easily transferred to many other host strains to be examined. Thus, the construction of libraries and examination of different host strains are much easier than the conventional hard-coded gene manipulation systems. Also, the expression of genes can be conditionally repressed by controlling the production of synthetic sRNAs. Synthetic sRNAs possessing different repression efficiencies make it possible to finely tune the gene expression levels as well. Furthermore, synthetic sRNAs allow knock-down of the expression of essential genes, which was not possible by conventional gene knock-out experiments.
Synthetic sRNAs can be utilized for diverse experiments where gene expression regulation is needed. One of promising applications is high-throughput screening of the target genes to be manipulated and multiple strains simultaneously to enhance the production of chemicals and materials of interest. Such simultaneous optimization of gene targets and strains has been one of the big challenges in metabolic engineering. Another application is to fine tune the expression of the screened genes for flux optimization, which would enhance chemical production further by balancing the flux between biomass formation and target chemical production. Synthetic sRNAs can also be applied to finely regulating genetic interactions in a circuit or network, which is essential in synthetic biology. Once a sRNA scaffold-harboring plasmid is constructed, tailor-made, synthetic sRNAs can be made within 3-4 days, followed by the desired application experiments.
Dr. Eytan Zlotorynski, an editor at Nature Protocols, said "This paper describes the detailed protocol for the design and applications of synthetic sRNA. The method, which has many advantages, is likely to become common practice, and prove useful for metabolic engineering and synthetic biology studies."
This paper published in Nature Protocols will be useful for all researchers in academia and industry who are interested in the use of synthetic sRNAs for fundamental and applied biological and biotechnological studies.
This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012-C1AAA001-2012M1A2A2026556) and the Intelligent Synthetic Biology Center through the Global Frontier Project (2011-0031963) of the Ministry of Science, ICT and Future Planning through the National Research Foundation of Korea.
2013.10.31 View 10064 -
Distinguished Professor Sang Yup Lee appointed as an advisor for Shanghai Jiao Tong University in China
In recognition of his outstanding accomplishments in the area of bioengineering, specializing in metabolic engineering, Sang Yup Lee, a distinguished professor of Chemical & Biomolecular Engineering at KAIST, was assigned as an advisory professor for the bioengineering department at Shanghai Jiao Tong University in China for five years from August 2013 to July 2018.
Together with Peking University and Tsinghua University, Shanghai Jiao Tong University is one of the top three universities in China.
The advisory professors carry out collaborated research programs in special areas and provide advice on education and research issues.
Professor Lee, a specialist in metabolic engineering, has initiated systems metabolic engineering which integrates metabolic engineering, systems biology, and synthetic biology and has applied it to various chemical production systems to develop bio fuel and many eco-friendly chemical production processes. Recently, he received the Marvin J. Johnson Award from the American Chemistry Society, the Charles Thom Award from the American Society for Industrial Microbiology, as well as the Amgen Biochemical Engineering Award. As a global leader in the area of bioengineering, Professor Lee is a member of the Korean Academy of Science & Technology, the National Academy of Engineering of Korea, the US National Academy of Engineering, and is the chairman of the Global Agenda Council on Biotechnology at the World Economic Forum.
2013.10.31 View 9259 -
Nanowire Made of Diverse Materials May Become Marketable
- Technology to commercialize nanowire developed after 2 years of industrial-academic joint research -
- 2 million strands of 50nm-width, 20 cm-length nanowire mass producible in 2 hours –
A South Korean joint industrial-academic research team has developed the technology to put forward the commercialization of nanowire that is only a few nanometers wide. It is expected to be applied in various fields such as semiconductors, high performance sensors, and biodevices.
In cooperation with LG Innotek and the National Nanofab center, Professor Jun-Bo Yoon, from KAIST Department of Electrical Engineering, developed the technology to mass produce nanowire at any length with various materials. The research results are published on the online edition of Nano Letters on July 30th.
Nanowire has a long linear structure with its width at 100 nanometers at maximum. It is a multifunctional material that has yet undiscovered thermal, electric, and mechanical properties. Nanowire is highly acclaimed as a cutting-edge material with unique nano-level properties that can be applied in semiconductors, energy, biodevices, and optic devices.
Previously, nanowires had an extremely low synthesis rate that required three or four days to grow few millimeters. It was therefore difficult to produce the desired products using nanowires. Moreover, nanowires needed to be evenly arranged for practical application, but the traditional technology required complex post-treatment, not to mention the arrangement was not immaculate.
The research team applied semiconductor process instead of chemical synthesis to resolve these issues. The team first formed a pattern greater that of the target frequency by using a photo-engraving process on a silicon wafer board whose diameter was 20 centimeters, then repeatedly reduced the frequency to produce 100 nm ultrafine linear grid pattern. Based on this pattern, the research team applied the sputtering process to mass-produce nanowires in perfect shapes of 50 nm width and 20 cm maximum length.
The new technology requires neither a lengthy synthesis process nor post-cleaning to attain a perfectly aligned state. Thus, academic and industrial circles consider the technology has high possibilities for commercialization.
“The significance is in resolving the issues in traditional technology, such as low productivity, long manufacturing time, restrictions in material synthesis, and nanowire alignment,” commented Professor Yoon on this research. “Nanowires have not been widely applied in the industry, but this technology will bring forward the commercialization of high performance semiconductors, optic devices, and biodevices that make use of nanowires.”
2013.10.18 View 9769 -
Professor Kwang-Hyun Cho publishes Encyclopaedia of Systems Biology
Professor Kwang-Hyun Cho
KAIST Biological and Brain Engineering Department’s Professor Kwang-Hyun Cho edited the Encyclopaedia of Systems Biology with three scholars, all experts of Systems Biology in England, Germany and the United States. It is rare that a Korean scientist edits a world renowned academic science encyclopaedia.
The Encyclopaedia, published by the New York office of Springer Verlag, was a grand international project five years in the making by 28 editors and 391 scientists with expertise in Systems Biology from around the world. The Encyclopaedia compiles various research areas of Systems Biology, the new academic paradigm of the 21st century through the integration of IT and BT, comprehensively on 3,000 pages in 4 four volumes.
Professor Kwang-Hyun Cho, who led this international project, majored in electrical engineering and pioneered the field of Systems Biology, the integrated study of biological sciences and engineering, as a new integrated field of IT since the 1990s. The professor has achieved various innovative research results since then. Recently he has investigated “kernel,” an evolutionary core structure in complex biological networks and developed a new cancer treatment through the state space analysis of the molecular network of cancer cells. His work was published in Science Signalling, a sister journal of Science, as a cover story several times, and contributed to foundational research as well as commercialisation of the integrated fields of IT and BT.
2013.08.27 View 10007 -
Secondary, High Capacity Battery developed from Rice Husks
Rice husks, a waste product from rice polishing, has been successfully utilized as the silicon anode for use in high capacity lithium ion secondary batteries. The new silicon anode derived from rice husks exhibit superior output and lifespan.
Professor Choi Jang Wook (The Graduate School of Energy, Environment, Water and Sustainability (EEWS)) and Professor Park Seung Min (Department of Biochemistry) and their respective research teams separated naturally occurring, highly porous silica material within the rice husks and developed a 3-dimensional, highly porous silicon anode material.
The result of the research effort was published in the online edition of the Proceedings of the National Academy of Sciences (PNAS) journal, a world renowned journal in the field of natural sciences.
Silicon has attracted much attention as anode material for next generation lithium ion secondary batteries because it exhibits 3~5 times higher capacity than conventional graphene. The high capacity will pave the way to lithium secondary batteries with higher energy densities than conventional batteries. It is anticipated that the application of silicon batteries will yield electronic devices with a longer duration for use in addition to electronic vehicles boasting longer mileage.
The silicon anode is based on the 3-dimensional, highly porous structure of rice husks which remedies the problematic extreme volume expansion of conventional silicon anodes.
Utilization of inexpensive rice husks to create high value silicon anodes will cause a ripple effect on the industry and academia.
2013.08.23 View 11041
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Short Wavelength, Ultra-High Speed Quantum Light Source based on Quantum Dot Developed
Professor Yong Hoon, Cho (Department of Physics) and his research team synthesized an obelisk nanostructure and successfully formed a single semiconductor quantum exhibiting high reliability to realize an ultra-high speed, highly efficient, release of quantum dots.
The result of the research effort was published in the July 5th online edition of Scientific Reports published by Nature.
Semiconductor Quantum Dots restrict electrons within a cubic boundary of few nanometers thereby exhibiting similar properties to an atom with discontinuous energy levels. Exploitation of this characteristic makes possible the development of quantum light source, critical for next generation quantum information communication and quantum encryption.
High operational temperatures, stability, rapid photon release, electric current capability, and other advantages are reasons why semiconductor quantum dots are regarded as next generation core technology.
However conventional, spontaneously formed quantum dots are densely packed in a planar structure rendering the analysis of a single quantum dot difficult and result in the poor efficiency of photon release. In addition, the internal electromagnetic effect which is caused by inter-planar stress results in low internal quantum efficiency due to the difficulty in electron-hole recombination.
Professor Cho’s research team synthesized an obelisk shaped nanostructure using nitrides that emit short wavelengths of light. The activation layer was grown on the tip of the nanostructure and the team succeeded in placing a single quantum dot on the nano-tip. The team was therefore able to confirm the ultra-high speed single photon characteristics which occur at low energy levels.
Use of unique nanostructures makes synthesis of single atomic structures without processes like patterning while enabling the release of light emitted by the quantum dot.
Using this unique method the team showed the increase in internal quantum efficiency. The electromagnetic forces apparent in thin films no longer affects the quantum dot greatly due to the obelisk structure’s reduced inter planar stress.
The newly developed quantum light source emits visible light (400nm range) and not the conventional infrared light. This characteristic makes possible it use in communication in free space and enables use of highly efficient, visible range photon detector.
Professor Cho commented that “the developed method makes quantum dot growth much easier making single photon synthesis much faster to contribute to the development of practical quantum light source.” And that “the characteristics of the obelisk nanostructure enable the easy detachment from and attachment to other substrates enabling its use in producing single chip quantum light source.”
The research was conducted under the supervision of Professor Cho. The researchers werey Jae Hyung, Kim (first author) and Yong Ho, Ko (second author), both Ph.D. candidates at KAIST. The Ministry of Science, ICT and Future Planning, the National Research Foundation, and WCU Program provided support to the research effort.
2013.08.23 View 8752