AI
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KAIST Develops AI ‘MARIOH’ to Uncover and Reconstruct Hidden Multi-Entity Relationships
<(From Left) Professor Kijung Shin, Ph.D candidate Kyuhan Lee, and Ph.D candidate Geon Lee>
Just like when multiple people gather simultaneously in a meeting room, higher-order interactions—where many entities interact at once—occur across various fields and reflect the complexity of real-world relationships. However, due to technical limitations, in many fields, only low-order pairwise interactions between entities can be observed and collected, which results in the loss of full context and restricts practical use. KAIST researchers have developed the AI model “MARIOH,” which can accurately reconstruct* higher-order interactions from such low-order information, opening up innovative analytical possibilities in fields like social network analysis, neuroscience, and life sciences.
*Reconstruction: Estimating/reconstructing the original structure that has disappeared or was not observed.
KAIST (President Kwang Hyung Lee) announced on the 5th that Professor Kijung Shin’s research team at the Kim Jaechul Graduate School of AI has developed an AI technology called “MARIOH” (Multiplicity-Aware Hypergraph Reconstruction), which can reconstruct higher-order interaction structures with high accuracy using only low-order interaction data.
Reconstructing higher-order interactions is challenging because a vast number of higher-order interactions can arise from the same low-order structure.
The key idea behind MARIOH, developed by the research team, is to utilize multiplicity information of low-order interactions to drastically reduce the number of candidate higher-order interactions that could stem from a given structure.
In addition, by employing efficient search techniques, MARIOH quickly identifies promising interaction candidates and uses multiplicity-based deep learning to accurately predict the likelihood that each candidate represents an actual higher-order interaction.
<Figure 1. An example of recovering high-dimensional relationships (right) from low-dimensional paper co-authorship relationships (left) with 100% accuracy, using MARIOH technology.>
Through experiments on ten diverse real-world datasets, the research team showed that MARIOH reconstructed higher-order interactions with up to 74% greater accuracy compared to existing methods.
For instance, in a dataset on co-authorship relations (source: DBLP), MARIOH achieved a reconstruction accuracy of over 98%, significantly outperforming existing methods, which reached only about 86%. Furthermore, leveraging the reconstructed higher-order structures led to improved performance in downstream tasks, including prediction and classification.
According to Kijung, “MARIOH moves beyond existing approaches that rely solely on simplified connection information, enabling precise analysis of the complex interconnections found in the real world.” Furthermore, “it has broad potential applications in fields such as social network analysis for group chats or collaborative networks, life sciences for studying protein complexes or gene interactions, and neuroscience for tracking simultaneous activity across multiple brain regions.”
The research was conducted by Kyuhan Lee (Integrated M.S.–Ph.D. program at the Kim Jaechul Graduate School of AI at KAIST; currently a software engineer at GraphAI), Geon Lee (Integrated M.S.–Ph.D. program at KAIST), and Professor Kijung Shin. It was presented at the 41st IEEE International Conference on Data Engineering (IEEE ICDE), held in Hong Kong this past May.
※ Paper title: MARIOH: Multiplicity-Aware Hypergraph Reconstruction ※ DOI: https://doi.ieeecomputersociety.org/10.1109/ICDE65448.2025.00233
<Figure 2. An example of the process of recovering high-dimensional relationships using MARIOH technology>
This research was supported by the Institute of Information & Communications Technology Planning & Evaluation (IITP) through the project “EntireDB2AI: Foundational technologies and software for deep representation learning and prediction using complete relational databases,” as well as by the National Research Foundation of Korea through the project “Graph Foundation Model: Graph-based machine learning applicable across various modalities and domains.”
2025.08.05 View 245 -
Immune Signals Directly Modulate Brain's Emotional Circuits: Unraveling the Mechanism Behind Anxiety-Inducing Behaviors
KAIST's Department of Brain and Cognitive Sciences, led by Professor Jeong-Tae Kwon, has collaborated with MIT and Harvard Medical School to make a groundbreaking discovery. For the first time globally, their joint research has revealed that cytokines, released during immune responses, directly influence the brain's emotional circuits to regulate anxiety behavior.
The study provided experimental evidence for a bidirectional regulatory mechanism: inflammatory cytokines IL-17A and IL-17C act on specific neurons in the amygdala, a region known for emotional regulation, increasing their excitability and consequently inducing anxiety. Conversely, the anti-inflammatory cytokine IL-10 was found to suppress excitability in these very same neurons, thereby contributing to anxiety alleviation.
In a mouse model, the research team observed that while skin inflammation was mitigated by immunotherapy (IL-17RA antibody), anxiety levels paradoxically rose. This was attributed to elevated circulating IL-17 family cytokines leading to the overactivation of amygdala neurons.
Key finding: Inflammatory cytokines IL-17A/17C promote anxiety by acting on excitable amygdala neurons (via IL-17RA/RE receptors), whereas anti-inflammatory cytokine IL-10 alleviates anxiety by suppressing excitability through IL-10RA receptors on the same neurons.
The researchers further elucidated that the anti-inflammatory cytokine IL-10 works to reduce the excitability of these amygdala neurons, thereby mitigating anxiety responses.
This research marks the first instance of demonstrating that immune responses, such as infections or inflammation, directly impact emotional regulation at the level of brain circuits, extending beyond simple physical reactions. This is a profoundly significant achievement, as it proposes a crucial biological mechanism that interlinks immunity, emotion, and behavior through identical neurons within the brain.
The findings of this research were published in the esteemed international journal Cell on April 17th of this year.
Paper Information:
Title: Inflammatory and anti-inflammatory cytokines bidirectionally modulate amygdala circuits regulating anxiety
Journal: Cell (Vol. 188, 2190–2220), April 17, 2025
DOI: https://doi.org/10.1016/j.cell.2025.03.005
Corresponding Authors: Professor Gloria Choi (MIT), Professor Jun R. Huh (Harvard Medical School)
2025.07.24 View 410 -
KAIST Successfully Implements 3D Brain-Mimicking Platform with 6x Higher Precision
<(From left) Dr. Dongjo Yoon, Professor Je-Kyun Park from the Department of Bio and Brain Engineering, (upper right) Professor Yoonkey Nam, Dr. Soo Jee Kim>
Existing three-dimensional (3D) neuronal culture technology has limitations in brain research due to the difficulty of precisely replicating the brain's complex multilayered structure and the lack of a platform that can simultaneously analyze both structure and function. A KAIST research team has successfully developed an integrated platform that can implement brain-like layered neuronal structures using 3D printing technology and precisely measure neuronal activity within them.
KAIST (President Kwang Hyung Lee) announced on the 16th of July that a joint research team led by Professors Je-Kyun Park and Yoonkey Nam from the Department of Bio and Brain Engineering has developed an integrated platform capable of fabricating high-resolution 3D multilayer neuronal networks using low-viscosity natural hydrogels with mechanical properties similar to brain tissue, and simultaneously analyzing their structural and functional connectivity.
Conventional bioprinting technology uses high-viscosity bioinks for structural stability, but this limits neuronal proliferation and neurite growth. Conversely, neural cell-friendly low-viscosity hydrogels are difficult to precisely pattern, leading to a fundamental trade-off between structural stability and biological function. The research team completed a sophisticated and stable brain-mimicking platform by combining three key technologies that enable the precise creation of brain structure with dilute gels, accurate alignment between layers, and simultaneous observation of neuronal activity.
The three core technologies are: ▲ 'Capillary Pinning Effect' technology, which enables the dilute gel (hydrogel) to adhere firmly to a stainless steel mesh (micromesh) to prevent it from flowing, thereby reproducing brain structures with six times greater precision (resolution of 500 μm or less) than conventional methods; ▲ the '3D Printing Aligner,' a cylindrical design that ensures the printed layers are precisely stacked without misalignment, guaranteeing the accurate assembly of multilayer structures and stable integration with microelectrode chips; and ▲ 'Dual-mode Analysis System' technology, which simultaneously measures electrical signals from below and observes cell activity with light (calcium imaging) from above, allowing for the simultaneous verification of the functional operation of interlayer connections through multiple methods.
< Figure 1. Platform integrating brain-structure-mimicking neural network model construction and functional measurement technology>
The research team successfully implemented a three-layered mini-brain structure using 3D printing with a fibrin hydrogel, which has elastic properties similar to those of the brain, and experimentally verified the process of actual neural cells transmitting and receiving signals within it.
Cortical neurons were placed in the upper and lower layers, while the middle layer was left empty but designed to allow neurons to penetrate and connect through it. Electrical signals were measured from the lower layer using a microsensor (electrode chip), and cell activity was observed from the upper layer using light (calcium imaging). The results showed that when electrical stimulation was applied, neural cells in both upper and lower layers responded simultaneously. When a synapse-blocking agent (synaptic blocker) was introduced, the response decreased, proving that the neural cells were genuinely connected and transmitting signals.
Professor Je-Kyun Park of KAIST explained, "This research is a joint development achievement of an integrated platform that can simultaneously reproduce the complex multilayered structure and function of brain tissue. Compared to existing technologies where signal measurement was impossible for more than 14 days, this platform maintains a stable microelectrode chip interface for over 27 days, allowing the real-time analysis of structure-function relationships. It can be utilized in various brain research fields such as neurological disease modeling, brain function research, neurotoxicity assessment, and neuroprotective drug screening in the future."
The research, in which Dr. Soo Jee Kim and Dr. Dongjo Yoon from KAIST's Department of Bio and Brain Engineering participated as co-first authors, was published online in the international journal 'Biosensors and Bioelectronics' on June 11, 2025.
※Paper: Hybrid biofabrication of multilayered 3D neuronal networks with structural and functional interlayer connectivity
※DOI: https://doi.org/10.1016/j.bios.2025.117688
2025.07.16 View 529 -
Development of Core NPU Technology to Improve ChatGPT Inference Performance by Over 60%
Latest generative AI models such as OpenAI's ChatGPT-4 and Google's Gemini 2.5 require not only high memory bandwidth but also large memory capacity. This is why generative AI cloud operating companies like Microsoft and Google purchase hundreds of thousands of NVIDIA GPUs. As a solution to address the core challenges of building such high-performance AI infrastructure, Korean researchers have succeeded in developing an NPU (Neural Processing Unit)* core technology that improves the inference performance of generative AI models by an average of over 60% while consuming approximately 44% less power compared to the latest GPUs.
*NPU (Neural Processing Unit): An AI-specific semiconductor chip designed to rapidly process artificial neural networks.
On the 4th, Professor Jongse Park's research team from KAIST School of Computing, in collaboration with HyperAccel Inc. (a startup founded by Professor Joo-Young Kim from the School of Electrical Engineering), announced that they have developed a high-performance, low-power NPU (Neural Processing Unit) core technology specialized for generative AI clouds like ChatGPT.
The technology proposed by the research team has been accepted by the '2025 International Symposium on Computer Architecture (ISCA 2025)', a top-tier international conference in the field of computer architecture.
The key objective of this research is to improve the performance of large-scale generative AI services by lightweighting the inference process, while minimizing accuracy loss and solving memory bottleneck issues. This research is highly recognized for its integrated design of AI semiconductors and AI system software, which are key components of AI infrastructure.
While existing GPU-based AI infrastructure requires multiple GPU devices to meet high bandwidth and capacity demands, this technology enables the configuration of the same level of AI infrastructure using fewer NPU devices through KV cache quantization*. KV cache accounts for most of the memory usage, thereby its quantization significantly reduces the cost of building generative AI clouds.
*KV Cache (Key-Value Cache) Quantization: Refers to reducing the data size in a type of temporary storage space used to improve performance when operating generative AI models (e.g., converting a 16-bit number to a 4-bit number reduces data size by 1/4).
The research team designed it to be integrated with memory interfaces without changing the operational logic of existing NPU architectures. This hardware architecture not only implements the proposed quantization algorithm but also adopts page-level memory management techniques* for efficient utilization of limited memory bandwidth and capacity, and introduces new encoding technique optimized for quantized KV cache.
*Page-level memory management technique: Virtualizes memory addresses, as the CPU does, to allow consistent access within the NPU.
Furthermore, when building an NPU-based AI cloud with superior cost and power efficiency compared to the latest GPUs, the high-performance, low-power nature of NPUs is expected to significantly reduce operating costs.
Professor Jongse Park stated, "This research, through joint work with HyperAccel Inc., found a solution in generative AI inference lightweighting algorithms and succeeded in developing a core NPU technology that can solve the 'memory problem.' Through this technology, we implemented an NPU with over 60% improved performance compared to the latest GPUs by combining quantization techniques that reduce memory requirements while maintaining inference accuracy, and hardware designs optimized for this".
He further emphasized, "This technology has demonstrated the possibility of implementing high-performance, low-power infrastructure specialized for generative AI, and is expected to play a key role not only in AI cloud data centers but also in the AI transformation (AX) environment represented by dynamic, executable AI such as 'Agentic AI'."
This research was presented by Ph.D. student Minsu Kim and Dr. Seongmin Hong from HyperAccel Inc. as co-first authors at the '2025 International Symposium on Computer Architecture (ISCA)' held in Tokyo, Japan, from June 21 to June 25. ISCA, a globally renowned academic conference, received 570 paper submissions this year, with only 127 papers accepted (an acceptance rate of 22.7%).
※Paper Title: Oaken: Fast and Efficient LLM Serving with Online-Offline Hybrid KV Cache Quantization
※DOI: https://doi.org/10.1145/3695053.3731019
Meanwhile, this research was supported by the National Research Foundation of Korea's Excellent Young Researcher Program, the Institute for Information & Communications Technology Planning & Evaluation (IITP), and the AI Semiconductor Graduate School Support Project.
2025.07.07 View 1199 -
2025 KAIST Global Entrepreneurship Summer School Concludes Successfully in Silicon Valley
< A group photo taken at the 2025 GESS Special Lecture.Vice President So Young Kim from the International Office, VC Jay Eum from GFT Ventures, Professor Byungchae Jin from the Impact MBA Program at the Business School, and Research Assistant Professor Sooa Lee from the Office of Global Initiative>
The “2025 KAIST Global Entrepreneurship Summer School (2025 KAIST GESS),” organized by the Office of Global Initiative of the KAIST International Office (Vice President So Young Kim), successfully concluded. Now in its fourth year, the program was designed to provide KAIST students with firsthand experience of the world’s leading startup ecosystem in Silicon Valley, USA, and to strengthen their practical capabilities to take on challenges on the global stage.
This year’s 2025 KAIST GESS welcomed approximately 40 participants, including 24 undergraduate and graduate students selected through document screening, interviews, team presentations, mentoring, and peer evaluations, as well as 16 Impact MBA students from the College of Business. The selected undergraduate and graduate participants underwent two months of pre-program training and received mentoring from experienced entrepreneurs to refine their business models and elevate their project ideas. Meanwhile, Impact MBA students joined the Silicon Valley program onsite, attending key lectures and networking sessions to broaden their understanding of the global startup ecosystem.
From June 22nd, participants spent seven days in Silicon Valley completing the global entrepreneurship curriculum. The program was operated in cooperation with major organizations including the KOTRA Silicon Valley IT Center, Korea-US AI Semiconductor Innovation Center (K-ASIC), and Plug and Play Tech Center. Local experts delivered lectures on topics such as “Startup Culture,” “Learning from Failures” and “Networks and Capital.”
Participants also had the opportunity to visit startups led by KAIST alumni and local entrepreneurs, gaining valuable insights from firsthand stories about global entrepreneurship. Companies visited included Medic Life Sciences (CEO Kyuho Han) and ImpriMed (CEO Sungwon Lim). Through these visits, participants received practical advice on market entry strategies and overcoming challenges in the global arena.
As part of their first onsite schedule, KAIST students attended an interactive fireside chat titled “Global Entrepreneurship and AI,” where they engaged in in-depth discussions on the future of AI-driven global startups. The session featured three distinguished speakers: Jay Kim, Head of US Business Development at Hyper Accel; Chandra Shekhar Dhir, AI/ML Director at JPMorgan Chase’s Machine Learning Center of Excellence; and Taesu Kim, co-founder of AI voice synthesis startup Neosapience and KAIST alumnus. Taesu Kim shared, “Facing serious health issues made me reflect on my life, and after recovering, I wanted to pursue something that could create a real impact on society, which led me to start my own company.” He also advised students to “take time at important turning points in life to deeply think about what you truly want to do and how you can contribute to society.
In line with the core value of ‘paying it forward’—a fundamental principle of global entrepreneurship learned in Silicon Valley—GESS participants engaged in a community service project titled “Let’s Play with AI+Tech,” organized in collaboration with the Sunnyvale community and Foothill College. Leveraging their strong foundation in AI, KAIST students designed and led a hands-on ‘Doodle AI’ educational program to make foundational AI concepts accessible and engaging for underrepresented local elementary school children and their parents, fostering meaningful community interaction.
On the final day of the 2025 KAIST GESS, a pitch competition was held with participation from Silicon Valley venture capitalists and accelerators. Participants presented their business models, developed over the two-month program, to a panel of judges. The winning team was eaureco, and Si Li Sara Aow (Civil and Environmental Engineering) shared, “GESS was a valuable opportunity to test and hone practical entrepreneurship skills beyond mere networking.” She added, “At first, I lacked confidence, but challenging myself to pitch in the final presentation gave me the courage to take one step closer to global entrepreneurship. Pitching in Silicon Valley, the heart of global startups, was an invaluable experience that will shape my path as a global entrepreneur.”
The program concluded with a special lecture by Jay Eum, a seasoned Silicon Valley venture capitalist and a judging panel member for GESS over the past three years. He shared key insights on startup success from an investor’s perspective, advising, “The journey of entrepreneurship is never easy, but the sooner you start, the better.” He further encouraged participants to “focus on solving problems in local markets, but do not fear challenging global markets,” inspiring them with courage and actionable advice.
So Young Kim, Director of the KAIST Office of Global Initiative, said, “We hope the 2025 KAIST GESS serves as a stepping stone for KAIST students to grow into influential entrepreneurs on the global stage,” adding, “This program is also expected to further enhance KAIST’s international reputation.”
Byungchae Jin, Faculty Chair of the KAIST Impact MBA, College of Business, highlighted the program's educational benefits, stating, “Engaging directly with local entrepreneurs and gaining practical experience in Silicon Valley's startup environment provide students with hands-on learning and significant inspiration.”
The 2025 KAIST GESS was jointly hosted by the KAIST Office of Global Initiative, Impact MBA, and Startup KAIST. Moving forward, KAIST plans to continue expanding its field-based global entrepreneurship education by linking with key global hubs like Silicon Valley, fostering next-generation global leaders who will lead innovation and challenge the status quo.
2025.07.01 View 1354 -
KAIST Researchers Unveil an AI that Generates "Unexpectedly Original" Designs
< Photo 1. Professor Jaesik Choi, KAIST Kim Jaechul Graduate School of AI >
Recently, text-based image generation models can automatically create high-resolution, high-quality images solely from natural language descriptions. However, when a typical example like the Stable Diffusion model is given the text "creative," its ability to generate truly creative images remains limited. KAIST researchers have developed a technology that can enhance the creativity of text-based image generation models such as Stable Diffusion without additional training, allowing AI to draw creative chair designs that are far from ordinary.
Professor Jaesik Choi's research team at KAIST Kim Jaechul Graduate School of AI, in collaboration with NAVER AI Lab, developed this technology to enhance the creative generation of AI generative models without the need for additional training.
< Photo 2. Gayoung Lee, Researcher at NAVER AI Lab; Dahee Kwon, Ph.D. Candidate at KAIST Kim Jaechul Graduate School of AI; Jiyeon Han, Ph.D. Candidate at KAIST Kim Jaechul Graduate School of AI; Junho Kim, Researcher at NAVER AI Lab >
Professor Choi's research team developed a technology to enhance creative generation by amplifying the internal feature maps of text-based image generation models. They also discovered that shallow blocks within the model play a crucial role in creative generation. They confirmed that amplifying values in the high-frequency region after converting feature maps to the frequency domain can lead to noise or fragmented color patterns. Accordingly, the research team demonstrated that amplifying the low-frequency region of shallow blocks can effectively enhance creative generation.
Considering originality and usefulness as two key elements defining creativity, the research team proposed an algorithm that automatically selects the optimal amplification value for each block within the generative model.
Through the developed algorithm, appropriate amplification of the internal feature maps of a pre-trained Stable Diffusion model was able to enhance creative generation without additional classification data or training.
< Figure 1. Overview of the methodology researched by the development team. After converting the internal feature map of a pre-trained generative model into the frequency domain through Fast Fourier Transform, the low-frequency region of the feature map is amplified, then re-transformed into the feature space via Inverse Fast Fourier Transform to generate an image. >
The research team quantitatively proved, using various metrics, that their developed algorithm can generate images that are more novel than those from existing models, without significantly compromising utility.
In particular, they confirmed an increase in image diversity by mitigating the mode collapse problem that occurs in the SDXL-Turbo model, which was developed to significantly improve the image generation speed of the Stable Diffusion XL (SDXL) model. Furthermore, user studies showed that human evaluation also confirmed a significant improvement in novelty relative to utility compared to existing methods.
Jiyeon Han and Dahee Kwon, Ph.D. candidates at KAIST and co-first authors of the paper, stated, "This is the first methodology to enhance the creative generation of generative models without new training or fine-tuning. We have shown that the latent creativity within trained AI generative models can be enhanced through feature map manipulation."
They added, "This research makes it easy to generate creative images using only text from existing trained models. It is expected to provide new inspiration in various fields, such as creative product design, and contribute to the practical and useful application of AI models in the creative ecosystem."
< Figure 2. Application examples of the methodology researched by the development team. Various Stable Diffusion models generate novel images compared to existing generations while maintaining the meaning of the generated object. >
This research, co-authored by Jiyeon Han and Dahee Kwon, Ph.D. candidates at KAIST Kim Jaechul Graduate School of AI, was presented on June 16 at the International Conference on Computer Vision and Pattern Recognition (CVPR), an international academic conference.* Paper Title: Enhancing Creative Generation on Stable Diffusion-based Models* DOI: https://doi.org/10.48550/arXiv.2503.23538
This research was supported by the KAIST-NAVER Ultra-creative AI Research Center, the Innovation Growth Engine Project Explainable AI, the AI Research Hub Project, and research on flexible evolving AI technology development in line with increasingly strengthened ethical policies, all funded by the Ministry of Science and ICT through the Institute for Information & Communications Technology Promotion. It also received support from the KAIST AI Graduate School Program and was carried out at the KAIST Future Defense AI Specialized Research Center with support from the Defense Acquisition Program Administration and the Agency for Defense Development.
2025.06.20 View 2002 -
High-Resolution Spectrometer that Fits into Smartphones Developed by KAIST Researchers
- Professor Mooseok Jang's research team at the Department of Bio and Brain Engineering develops an ultra-compact, high-resolution spectrometer using 'double-layer disordered metasurfaces' that generate unique random patterns depending on light's color.
- Unlike conventional dispersion-based spectrometers that were difficult to apply to portable devices, this new concept spectrometer technology achieves 1nm-level high resolution in a device smaller than 1cm, comparable in size to a fingernail.
- It can be utilized as a built-in spectrometer in smartphones and wearable devices in the future, and can be expanded to advanced optical technologies such as hyperspectral imaging and ultrafast imaging.
< Photo 1. (From left) Professor Mooseok Jang, Dong-gu Lee (Ph.D. candidate), Gookho Song (Ph.D. candidate) >
Color, as the way light's wavelength is perceived by the human eye, goes beyond a simple aesthetic element, containing important scientific information like a substance's composition or state. Spectrometers are optical devices that analyze material properties by decomposing light into its constituent wavelengths, and they are widely used in various scientific and industrial fields, including material analysis, chemical component detection, and life science research. Existing high-resolution spectrometers were large and complex, making them difficult for widespread daily use. However, thanks to the ultra-compact, high-resolution spectrometer developed by KAIST researchers, it is now expected that light's color information can be utilized even within smartphones or wearable devices.
KAIST (President Kwang Hyung Lee) announced on the 13th that Professor Mooseok Jang's research team at the Department of Bio and Brain Engineering has successfully developed a reconstruction-based spectrometer technology using double-layer disordered metasurfaces*.
*Double-layer disordered metasurface: An innovative optical device that complexly scatters light through two layers of disordered nanostructures, creating unique and predictable speckle patterns for each wavelength.
Existing high-resolution spectrometers have a large form factor, on the order of tens of centimeters, and require complex calibration processes to maintain accuracy. This fundamentally stems from the operating principle of traditional dispersive elements, such as gratings and prisms, which separate light wavelengths along the propagation direction, much like a rainbow separates colors. Consequently, despite the potential for light's color information to be widely useful in daily life, spectroscopic technology has been limited to laboratory or industrial manufacturing environments.
< Figure 1. Through a simple structure consisting of a double layer of disordered metasurfaces and an image sensor, it was shown that speckles of predictable spectral channels with high spectral resolution can be generated in a compact form factor. The high similarity between the measured and calculated speckles was used to solve the inverse problem and verify the ability to reconstruct the spectrum. >
The research team devised a method that departs from the conventional spectroscopic paradigm of using diffraction gratings or prisms, which establish a one-to-one correspondence between light's color information and its propagation direction, by utilizing designed disordered structures as optical components. In this process, they employed metasurfaces, which can freely control the light propagation process using structures tens to hundreds of nanometers in size, to accurately implement 'complex random patterns (speckle*)'.
*Speckle: An irregular pattern of light intensity created by the interference of multiple wavefronts of light.
Specifically, they developed a method that involves implementing a double-layer disordered metasurface to generate wavelength-specific speckle patterns and then reconstructing precise color information (wavelength) of the light from the random patterns measured by a camera.
As a result, they successfully developed a new concept spectrometer technology that can accurately measure light across a broad range of visible to infrared (440-1,300nm) with a high resolution of 1 nanometer (nm) in a device smaller than a fingernail (less than 1cm) using only a single image capture.
< Figure 2. A disordered metasurface is a metasurface with irregularly arranged structures ranging from tens to hundreds of nanometers in size. In a double-layer structure, a propagation space is placed between the two metasurfaces to control the output speckle with high degrees of freedom, thereby achieving a spectral resolution of 1 nm even in a form factor smaller than 1 cm. >
Dong-gu Lee, a lead author of this study, stated, "This technology is implemented in a way that is directly integrated with commercial image sensors, and we expect that it will enable easy acquisition and utilization of light's wavelength information in daily life when built into mobile devices in the future."
Professor Mooseok Jang said, "This technology overcomes the limitations of existing RGB three-color based machine vision fields, which only distinguish and recognize three color components (red, green, blue), and has diverse applications. We anticipate various applied research for this technology, which expands the horizon of laboratory-level technology to daily-level machine vision technology for applications such as food component analysis, crop health diagnosis, skin health measurement, environmental pollution detection, and bio/medical diagnostics." He added, "Furthermore, it can be extended to various advanced optical technologies such as hyperspectral imaging, which records wavelength and spatial information simultaneously with high resolution, 3D optical trapping technology, which precisely controls light of multiple wavelengths into desired forms, and ultrafast imaging technology, which captures phenomena occurring in very short periods."
This research was collaboratively led by Dong-gu Lee (Ph.D. candidate) and Gookho Song (Ph.D. candidate) from the KAIST Department of Bio and Brain Engineering as co-first authors, with Professor Mooseok Jang as the corresponding author. The findings were published online in the international journal Science Advances on May 28, 2025.* Paper Title: Reconstructive spectrometer using double-layer disordered metasurfaces* DOI: 10.1126/sciadv.adv2376
This research was supported by the Samsung Research Funding and Incubation Center of Samsung Electronics grant, the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT), and the Bio & Medical Technology Development Program of the National Research Foundation (NRF) funded by the Korean government (MSIT).
2025.06.13 View 2634 -
KAIST Introduces ‘Virtual Teaching Assistant’ That can Answer Even in the Middle of the Night – Successful First Deployment in Classroom
- Research teams led by Prof. Yoonjae Choi (Kim Jaechul Graduate School of AI) and Prof. Hwajeong Hong (Department of Industrial Design) at KAIST developed a Virtual Teaching Assistant (VTA) to support learning and class operations for a course with 477 students.
- The VTA responds 24/7 to students’ questions related to theory and practice by referencing lecture slides, coding assignments, and lecture videos.
- The system’s source code has been released to support future development of personalized learning support systems and their application in educational settings.
< Photo 1. (From left) PhD candidate Sunjun Kweon, Master's candidate Sooyohn Nam, PhD candidate Hyunseung Lim, Professor Hwajung Hong, Professor Yoonjae Choi >
“At first, I didn’t have high expectations for the Virtual Teaching Assistant (VTA), but it turned out to be extremely helpful—especially when I had sudden questions late at night, I could get immediate answers,” said Jiwon Yang, a Ph.D. student at KAIST. “I was also able to ask questions I would’ve hesitated to bring up with a human TA, which led me to ask even more and ultimately improved my understanding of the course.”
KAIST (President Kwang Hyung Lee) announced on June 5th that a joint research team led by Prof. Yoonjae Choi of the Kim Jaechul Graduate School of AI and Prof. Hwajeong Hong of the Department of Industrial Design has successfully developed and deployed a Virtual Teaching Assistant (VTA) that provides personalized feedback to individual students even in large-scale classes.
This study marks one of the first large-scale, real-world deployments in Korea, where the VTA was introduced in the “Programming for Artificial Intelligence” course at the KAIST Kim Jaechul Graduate School of AI, taken by 477 master’s and Ph.D. students during the Fall 2024 semester, to evaluate its effectiveness and practical applicability in an actual educational setting.
The AI teaching assistant developed in this study is a course-specialized agent, distinct from general-purpose tools like ChatGPT or conventional chatbots. The research team implemented a Retrieval-Augmented Generation (RAG) architecture, which automatically vectorizes a large volume of course materials—including lecture slides, coding assignments, and video lectures—and uses them as the basis for answering students’ questions.
< Photo 2. Teaching Assistant demonstrating to the student how the Virtual Teaching Assistant works>
When a student asks a question, the system searches for the most relevant course materials in real time based on the context of the query, and then generates a response. This process is not merely a simple call to a large language model (LLM), but rather a material-grounded question answering system tailored to the course content—ensuring both high reliability and accuracy in learning support.
Sunjun Kweon, the first author of the study and head teaching assistant for the course, explained, “Previously, TAs were overwhelmed with repetitive and basic questions—such as concepts already covered in class or simple definitions—which made it difficult to focus on more meaningful inquiries.” He added, “After introducing the VTA, students began to reduce repeated questions and focus on more essential ones. As a result, the burden on TAs was significantly reduced, allowing us to concentrate on providing more advanced learning support.”
In fact, compared to the previous year’s course, the number of questions that required direct responses from human TAs decreased by approximately 40%.
< Photo 3. A student working with VTA. >
The VTA, which was operated over a 14-week period, was actively used by more than half of the enrolled students, with a total of 3,869 Q&A interactions recorded. Notably, students without a background in AI or with limited prior knowledge tended to use the VTA more frequently, indicating that the system provided practical support as a learning aid, especially for those who needed it most.
The analysis also showed that students tended to ask the VTA more frequently about theoretical concepts than they did with human TAs. This suggests that the AI teaching assistant created an environment where students felt free to ask questions without fear of judgment or discomfort, thereby encouraging more active engagement in the learning process.
According to surveys conducted before, during, and after the course, students reported increased trust, response relevance, and comfort with the VTA over time. In particular, students who had previously hesitated to ask human TAs questions showed higher levels of satisfaction when interacting with the AI teaching assistant.
< Figure 1. Internal structure of the AI Teaching Assistant (VTA) applied in this course. It follows a Retrieval-Augmented Generation (RAG) structure that builds a vector database from course materials (PDFs, recorded lectures, coding practice materials, etc.), searches for relevant documents based on student questions and conversation history, and then generates responses based on them. >
Professor Yoonjae Choi, the lead instructor of the course and principal investigator of the study, stated, “The significance of this research lies in demonstrating that AI technology can provide practical support to both students and instructors. We hope to see this technology expanded to a wider range of courses in the future.”
The research team has released the system’s source code on GitHub, enabling other educational institutions and researchers to develop their own customized learning support systems and apply them in real-world classroom settings.
< Figure 2. Initial screen of the AI Teaching Assistant (VTA) introduced in the "Programming for AI" course. It asks for student ID input along with simple guidelines, a mechanism to ensure that only registered students can use it, blocking indiscriminate external access and ensuring limited use based on students. >
The related paper, titled “A Large-Scale Real-World Evaluation of an LLM-Based Virtual Teaching Assistant,” was accepted on May 9, 2025, to the Industry Track of ACL 2025, one of the most prestigious international conferences in the field of Natural Language Processing (NLP), recognizing the excellence of the research.
< Figure 3. Example conversation with the AI Teaching Assistant (VTA). When a student inputs a class-related question, the system internally searches for relevant class materials and then generates an answer based on them. In this way, VTA provides learning support by reflecting class content in context. >
This research was conducted with the support of the KAIST Center for Teaching and Learning Innovation, the National Research Foundation of Korea, and the National IT Industry Promotion Agency.
2025.06.05 View 2599 -
KAIST to Develop a Korean-style ChatGPT Platform Specifically Geared Toward Medical Diagnosis and Drug Discovery
On May 23rd, KAIST (President Kwang-Hyung Lee) announced that its Digital Bio-Health AI Research Center (Director: Professor JongChul Ye of KAIST Kim Jaechul Graduate School of AI) has been selected for the Ministry of Science and ICT's 'AI Top-Tier Young Researcher Support Program (AI Star Fellowship Project).' With a total investment of ₩11.5 billion from May 2025 to December 2030, the center will embark on the full-scale development of AI technology and a platform capable of independently inferring and determining the kinds of diseases, and discovering new drugs.
< Photo. On May 20th, a kick-off meeting for the AI Star Fellowship Project was held at KAIST Kim Jaechul Graduate School of AI’s Yangjae Research Center with the KAIST research team and participating organizations of Samsung Medical Center, NAVER Cloud, and HITS. [From left to right in the front row] Professor Jaegul Joo (KAIST), Professor Yoonjae Choi (KAIST), Professor Woo Youn Kim (KAIST/HITS), Professor JongChul Ye (KAIST), Professor Sungsoo Ahn (KAIST), Dr. Haanju Yoo (NAVER Cloud), Yoonho Lee (KAIST), HyeYoon Moon (Samsung Medical Center), Dr. Su Min Kim (Samsung Medical Center) >
This project aims to foster an innovative AI research ecosystem centered on young researchers and develop an inferential AI agent that can utilize and automatically expand specialized knowledge systems in the bio and medical fields.
Professor JongChul Ye of the Kim Jaechul Graduate School of AI will serve as the lead researcher, with young researchers from KAIST including Professors Yoonjae Choi, Kimin Lee, Sungsoo Ahn, and Chanyoung Park, along with mid-career researchers like Professors Jaegul Joo and Woo Youn Kim, jointly undertaking the project. They will collaborate with various laboratories within KAIST to conduct comprehensive research covering the entire cycle from the theoretical foundations of AI inference to its practical application.
Specifically, the main goals include: - Building high-performance inference models that integrate diverse medical knowledge systems to enhance the precision and reliability of diagnosis and treatment. - Developing a convergence inference platform that efficiently combines symbol-based inference with neural network models. - Securing AI technology for new drug development and biomarker discovery based on 'cell ontology.'
Furthermore, through close collaboration with industry and medical institutions such as Samsung Medical Center, NAVER Cloud, and HITS Co., Ltd., the project aims to achieve: - Clinical diagnostic AI utilizing medical knowledge systems. - AI-based molecular target exploration for new drug development. - Commercialization of an extendible AI inference platform.
Professor JongChul Ye, Director of KAIST's Digital Bio-Health AI Research Center, stated, "At a time when competition in AI inference model development is intensifying, it is a great honor for KAIST to lead the development of AI technology specialized in the bio and medical fields with world-class young researchers." He added, "We will do our best to ensure that the participating young researchers reach a world-leading level in terms of research achievements after the completion of this seven-year project starting in 2025."
The AI Star Fellowship is a newly established program where post-doctoral researchers and faculty members within seven years of appointment participate as project leaders (PLs) to independently lead research. Multiple laboratories within a university and demand-side companies form a consortium to operate the program.
Through this initiative, KAIST plans to nurture bio-medical convergence AI talent and simultaneously promote the commercialization of core technologies in collaboration with Samsung Medical Center, NAVER Cloud, and HITS.
2025.05.26 View 5436 -
Editing Parkinson's Disease – KAIST Makes World's First Discovery of an Inflammatory RNA Editing Enzyme through Co-work with UCL Researchers
< Professor Minee Choi of the Department of Brain and Cognitive Sciences (top left). Professor Sonia Gandhi (top right) and Professor Klenerman of the University College London (bottom right) >
Parkinson's disease (PD) is a neurodegenerative disorder in which the α-synuclein protein abnormally aggregates within brain cells, causing neuronal damage. Through international collaboration, researchers at KAIST have revealed that RNA editing plays a crucial role in regulating neuroinflammation, a key pathology of Parkinson's disease.
KAIST (represented by President Kwang-Hyung Lee) announced on the 27th of April that a research team led by Professor Minee L. Choi from the Department of Brain and Cognitive Sciences, in collaboration with University College London (UCL) and the Francis Crick Institute, discovered that the RNA editing enzyme ADAR1 plays an important role in controlling immune responses in astrocytes, glial cells that trigger protective reactions in the brain, and demonstrated that this mechanism is critically involved in the progression of Parkinson’s disease.
Professor Choi's research team created a co-culture model composed of astrocytes and neurons derived from stem cells originating from Parkinson's disease patients, in order to study the inflammatory responses of brain immune cells. They then treated the model with α-synuclein aggregates, which are known to cause Parkinson’s disease, and analyzed how the immune cells' inflammatory responses changed.
< Figure 1. Schematic diagram of the inflammatory RNA editing model in Parkinson's disease >
As a result, it was found that early pathological forms of α-synuclein, known as oligomers, activated the Toll-like receptor pathway, which acts as a danger sensor in astrocytes, as well as the interferon response pathway, an immune signaling network that combats viruses and pathogens. During this process, the RNA editing enzyme ADAR1 was expressed and transformed into an isoform with an altered protein structure and function.
Notably, the RNA editing activity of ADAR1, which normally functions to regulate immune responses during viral infections by converting adenosine (A) to inosine (I) through a process known as A-to-I RNA editing, was found to be abnormally focused on genes that cause inflammation rather than operating under normal conditions. This phenomenon was observed not only in the patient-derived neuron models but also in postmortem brain tissues from actual Parkinson’s disease patients.
< Figure 2. Experimental design and inflammatory response induction in astrocytes following treatment with α-synuclein oligomers (abnormally folded protein fragments) >
This directly proves that the dysregulation of RNA editing induces chronic inflammatory responses in astrocytes, ultimately leading to neuronal toxicity and pathological progression.
This study is significant in that it newly identified the regulation of RNA editing within astrocytes as a key mechanism behind neuroinflammatory responses. In particular, it suggests that ADAR1 could serve as a novel genetic target for the treatment of Parkinson’s disease.
It is also noteworthy that the study reflected actual pathological characteristics of patients by utilizing patient-specific induced pluripotent stem cell-based precision models for brain diseases.
Professor Minee L. Choi stated, “This study demonstrates that the regulator of inflammation caused by protein aggregation operates at the new layer of RNA editing, offering a completely different therapeutic strategy from existing approaches to Parkinson's disease treatment." She further emphasized, “RNA editing technology could become an important turning point in the development of therapeutics for neuroinflammation.”
< Figure 3. When treated with α-synuclein oligomers, the causative agent of Parkinson's disease, A-to-I RNA editing is induced to change genetic information by ADAR in patient-derived stem cell-differentiated glial cells, confirming that α-synuclein is likely to be associated with the progression of Parkinson's disease through RNA editing >
This study was published in Science Advances on April 11, with Professor Choi listed as a co-first author.
Paper Title: Astrocytic RNA editing regulates the host immune response to alpha-synuclein, Science Advances Vol.11, Issue 15. (DOI:10.1126/sciadv.adp8504)
Lead Authors: Karishma D’Sa (UCL, Co-First Author), Minee L. Choi (KAIST, Co-First Author), Mina Ryten (UCL, Corresponding Author), Sonia Gandhi (Francis Crick Institute, University of Cambridge, Corresponding Author)
This research was supported by the Brain Research Program and the Excellent Young Researcher Program of the National Research Foundation of Korea, as well as KAIST’s Daekyo Cognitive Enhancement Program.
2025.05.02 View 5174 -
KAIST Identifies Master Regulator Blocking Immunotherapy, Paving the Way for a New Lung Cancer Treatment
Immune checkpoint inhibitors, a class of immunotherapies that help immune cells attack cancer more effectively, have revolutionized cancer treatment. However, fewer than 20% of patients respond to these treatments, highlighting the urgent need for new strategies tailored to both responders and non-responders.
KAIST researchers have discovered that 'DEAD-box helicases 54 (DDX54)', a type of RNA-binding protein, is the master regulator that hinders the effectiveness of immunotherapy—opening a new path for lung cancer treatment. This breakthrough technology has been transferred to faculty startup BioRevert Inc., where it is currently being developed as a companion therapeutic and is expected to enter clinical trials by 2028.
< Photo 1. (From left) Researcher Jungeun Lee, Professor Kwang-Hyun Cho and Postdoctoral Researcher Jeong-Ryeol Gong of the Department of Bio and Brain Engineering at KAIST >
KAIST (represented by President Kwang-Hyung Lee) announced on April 8 that a research team led by Professor Kwang-Hyun Cho from the Department of Bio and Brain Engineering had identified DDX54 as a critical factor that determines the immune evasion capacity of lung cancer cells. They demonstrated that suppressing DDX54 enhances immune cell infiltration into tumors and significantly improves the efficacy of immunotherapy.
Immunotherapy using anti-PD-1 or anti-PD-L1 antibodies is considered a powerful approach in cancer treatment. However, its low response rate limits the number of patients who actually benefit.
To identify likely responders, tumor mutational burden (TMB) has recently been approved by the FDA as a key biomarker for immunotherapy. Cancers with high mutation rates are thought to be more responsive to immune checkpoint inhibitors. However, even tumors with high TMB can display an “immune-desert” phenotype—where immune cell infiltration is severely limited—resulting in poor treatment responses.
< Figure 1. DDX54 was identified as the master regulator that induces resistance to immunotherapy by orchestrating suppression of immune cell infiltration through cancer tissues as lung cancer cells become immune-evasive >
Professor Kwang-Hyun Cho's research team compared transcriptome and genome data of lung cancer patients with immune evasion capabilities through gene regulatory network analysis (A) and discovered DDX54, a master regulator that induces resistance to immunotherapy (B-F).
This study is especially significant in that it successfully demonstrated that suppressing DDX54 in immune-desert lung tumors can overcome immunotherapy resistance and improve treatment outcomes.
The team used transcriptomic and genomic data from immune-evasive lung cancer patients and employed systems biology techniques to infer gene regulatory networks. Through this analysis, they identified DDX54 as a central regulator in the immune evasion of lung cancer cells.
In a syngeneic mouse model, the suppression of DDX54 led to significant increases in the infiltration of anti-cancer immune cells such as T cells and NK cells, and greatly improved the response to immunotherapy.
Single-cell transcriptomic and spatial transcriptomic analyses further showed that combination therapy targeting DDX54 promoted the differentiation of T cells and memory T cells that suppress tumors, while reducing the infiltration of regulatory T cells and exhausted T cells that support tumor growth.
< Figure 2. In the syngeneic mouse model made of lung cancer cells, it was confirmed that inhibiting DDX54 reversed the immune-evasion ability of cancer cells and enhanced the sensitivity to anti-PD-1 therapy >
In a syngeneic mouse model made of lung cancer cells exhibiting immunotherapy resistance, the treatment applied after DDX54 inhibition resulted in statistically significant inhibition of lung cancer growth (B-D) and a significant increase in immune cell infiltration into the tumor tissue (E, F).
The mechanism is believed to involve DDX54 suppression inactivating signaling pathways such as JAK-STAT, MYC, and NF-κB, thereby downregulating immune-evasive proteins CD38 and CD47. This also reduced the infiltration of circulating monocytes—which promote tumor development—and promoted the differentiation of M1 macrophages that play anti-tumor roles.
Professor Kwang-Hyun Cho stated, “We have, for the first time, identified a master regulatory factor that enables immune evasion in lung cancer cells. By targeting this factor, we developed a new therapeutic strategy that can induce responsiveness to immunotherapy in previously resistant cancers.”
He added, “The discovery of DDX54—hidden within the complex molecular networks of cancer cells—was made possible through the systematic integration of systems biology, combining IT and BT.”
The study, led by Professor Kwang-Hyun Cho, was published in the Proceedings of the National Academy of Sciences of the United States of America (PNAS) on April 2, 2025, with Jeong-Ryeol Gong being the first author, Jungeun Lee, a co-first author, and Younghyun Han, a co-author of the article.
< Figure 3. Single-cell transcriptome and spatial transcriptome analysis confirmed that knockdown of DDX54 increased immune cell infiltration into cancer tissues >
In a syngeneic mouse model made of lung cancer cells that underwent immunotherapy in combination with DDX54 inhibition, single-cell transcriptome (H-L) and spatial transcriptome (A-G) analysis of immune cells infiltrating inside cancer tissues were performed. As a result, it was confirmed that anticancer immune cells such as T cells, B cells, and NK cells actively infiltrated the core of lung cancer tissues when DDX54 inhibition and immunotherapy were concurrently administered.
(Paper title: “DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,” DOI: https://doi.org/10.1073/pnas.2412310122)
This work was supported by the Ministry of Science and ICT and the National Research Foundation of Korea through the Mid-Career Research Program and Basic Research Laboratory Program.
< Figure 4. The identified master regulator DDX54 was confirmed to induce CD38 and CD47 expression through Jak-Stat3, MYC, and NF-κB activation. >
DDX54 activates the Jak-Stat3, MYC, and NF-κB pathways in lung cancer cells to increase CD38 and CD47 expression (A-G). This creates a cancer microenvironment that contributes to cancer development (H) and ultimately induces immune anticancer treatment resistance.
< Figure 5. It was confirmed that an immune-inflamed environment can be created by combining DDX54 inhibition and immune checkpoint inhibitor (ICI) therapy. >
When DDX54 inhibition and ICI therapy are simultaneously administered, the cancer cell characteristics change, the immune evasion ability is restored, and the environment is transformed into an ‘immune-activated’ environment in which immune cells easily infiltrate cancer tissues. This strengthens the anticancer immune response, thereby increasing the sensitivity of immunotherapy even in lung cancer tissues that previously had low responsiveness to immunotherapy.
2025.04.08 View 7086 -
KAIST Discovers Molecular Switch that Reverses Cancerous Transformation at the Critical Moment of Transition
< (From left) PhD student Seoyoon D. Jeong, (bottom) Professor Kwang-Hyun Cho, (top) Dr. Dongkwan Shin, Dr. Jeong-Ryeol Gong >
Professor Kwang-Hyun Cho’s research team has recently been highlighted for their work on developing an original technology for cancer reversal treatment that does not kill cancer cells but only changes their characteristics to reverse them to a state similar to normal cells. This time, they have succeeded in revealing for the first time that a molecular switch that can induce cancer reversal at the moment when normal cells change into cancer cells is hidden in the genetic network.
KAIST (President Kwang-Hyung Lee) announced on the 5th of February that Professor Kwang-Hyun Cho's research team of the Department of Bio and Brain Engineering has succeeded in developing a fundamental technology to capture the critical transition phenomenon at the moment when normal cells change into cancer cells and analyze it to discover a molecular switch that can revert cancer cells back into normal cells.
A critical transition is a phenomenon in which a sudden change in state occurs at a specific point in time, like water changing into steam at 100℃. This critical transition phenomenon also occurs in the process in which normal cells change into cancer cells at a specific point in time due to the accumulation of genetic and epigenetic changes.
The research team discovered that normal cells can enter an unstable critical transition state where normal cells and cancer cells coexist just before they change into cancer cells during tumorigenesis, the production or development of tumors, and analyzed this critical transition state using a systems biology method to develop a cancer reversal molecular switch identification technology that can reverse the cancerization process. They then applied this to colon cancer cells and confirmed through molecular cell experiments that cancer cells can recover the characteristics of normal cells.
This is an original technology that automatically infers a computer model of the genetic network that controls the critical transition of cancer development from single-cell RNA sequencing data, and systematically finds molecular switches for cancer reversion by simulation analysis. It is expected that this technology will be applied to the development of reversion therapies for other cancers in the future.
Professor Kwang-Hyun Cho said, "We have discovered a molecular switch that can revert the fate of cancer cells back to a normal state by capturing the moment of critical transition right before normal cells are changed into an irreversible cancerous state."
< Figure 1. Overall conceptual framework of the technology that automatically constructs a molecular regulatory network from single-cell RNA sequencing data of colon cancer cells to discover molecular switches for cancer reversion through computer simulation analysis. Professor Kwang-Hyun Cho's research team established a fundamental technology for automatic construction of a computer model of a core gene network by analyzing the entire process of tumorigenesis of colon cells turning into cancer cells, and developed an original technology for discovering the molecular switches that can induce cancer cell reversal through attractor landscape analysis. >
He continued, "In particular, this study has revealed in detail, at the genetic network level, what changes occur within cells behind the process of cancer development, which has been considered a mystery until now." He emphasized, "This is the first study to reveal that an important clue that can revert the fate of tumorigenesis is hidden at this very critical moment of change."
< Figure 2. Identification of tumor transition state using single-cell RNA sequencing data from colorectal cancer. Using single-cell RNA sequencing data from colorectal cancer patient-derived organoids for normal and cancerous tissues, a critical transition was identified in which normal and cancerous cells coexist and instability increases (a-d). The critical transition was confirmed to show intermediate levels of major phenotypic features related to cancer or normal tissues that are indicative of the states between the normal and cancerous cells (e). >
The results of this study, conducted by KAIST Dr. Dongkwan Shin (currently at the National Cancer Center), Dr. Jeong-Ryeol Gong, and doctoral student Seoyoon D. Jeong jointly with a research team at Seoul National University that provided the organoids (in vitro cultured tissues) from colon cancer patient, were published as an online paper in the international journal ‘Advanced Science’ published by Wiley on January 22nd.
(Paper title: Attractor landscape analysis reveals a reversion switch in the transition of colorectal tumorigenesis) (DOI: https://doi.org/10.1002/advs.202412503)
< Figure 3. Reconstruction of a dynamic network model for the transition state of colorectal cancer.
A new technology was established to build a gene network computer model that can simulate the dynamic changes between genes by integrating single-cell RNA sequencing data and existing experimental results on gene-to-gene interactions in the critical transition of cancer. (a). Using this technology, a gene network computer model for the critical transition of colorectal cancer was constructed, and the distribution of attractors representing normal and cancer cell phenotypes was investigated through attractor landscape analysis (b-e). >
This study was conducted with the support of the National Research Foundation of Korea under the Ministry of Science and ICT through the Mid-Career Researcher Program and Basic Research Laboratory Program and the Disease-Centered Translational Research Project of the Korea Health Industry Development Institute (KHIDI) of the Ministry of Health and Welfare.
< Figure 4. Quantification of attractor landscapes and discovery of transcription factors for cancer reversibility through perturbation simulation analysis. A methodology for implementing discontinuous attractor landscapes continuously from a computer model of gene networks and quantifying them as cancer scores was introduced (a), and attractor landscapes for the critical transition of colorectal cancer were secured (b-d). By tracking the change patterns of normal and cancer cell attractors through perturbation simulation analysis for each gene, the optimal combination of transcription factors for cancer reversion was discovered (e-h). This was confirmed in various parameter combinations as well (i). >
< Figure 5. Identification and experimental validation of the optimal target gene for cancer reversion. Among the common target genes of the discovered transcription factor combinations, we identified cancer reversing molecular switches that are predicted to suppress cancer cell proliferation and restore the characteristics of normal colon cells (a-d). When inhibitors for the molecular switches were treated to organoids derived from colon cancer patients, it was confirmed that cancer cell proliferation was suppressed and the expression of key genes related to cancer development was inhibited (e-h), and a group of genes related to normal colon epithelium was activated and transformed into a state similar to normal colon cells (i-j). >
< Figure 6. Schematic diagram of the research results. Professor Kwang-Hyun Cho's research team developed an original technology to systematically discover key molecular switches that can induce reversion of colon cancer cells through a systems biology approach using an attractor landscape analysis of a genetic network model for the critical transition at the moment of transformation from normal cells to cancer cells, and verified the reversing effect of actual colon cancer through cellular experiments. >
2025.02.05 View 29892